Not knowing how much "half the pan" is I'd still guess that you're overpriming. Start with just a sprinkling of powder in the pan, roll the rifle so the priming charge is away from the flash hole, and see if it lights the main charge. try this several times. If it's inconsistent, increase your prime very slightly testing several times at each increase until you get consistent ignition. It is Anti intuitive to have the prime at the far end of the pan, but in my flinter that's where it worked best. The tiny amount needed for consistent ignition is amazing as well. Using more that needed only wastes powder, causes you to flinch and sets fires.
A new flintlock is like a new girlfriend, you have to try lots of things until you find where to touch her to make her squeal. A little patience and you'll soon have her making sounds only dogs can hear.
Three Hawks